Variant report

Variant	rs12632965
Chromosome Location	chr3:56829818-56829819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12638861	0.81[ASN][1000 genomes]
rs17216789	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3392720	chr3:56829812-56833210	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56807000-56833200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:56818600-56832000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:56819000-56830400	Weak transcription	HSMM	muscle
4	chr3:56819200-56834400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:56820600-56834600	Weak transcription	NHDF-Ad	bronchial
6	chr3:56821000-56830400	Weak transcription	Fetal Brain Female	brain
7	chr3:56822400-56833200	Weak transcription	Fetal Stomach	stomach
8	chr3:56822800-56833200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:56823400-56833200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:56824600-56830200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:56825000-56831800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:56825200-56832000	Weak transcription	Brain Substantia Nigra	brain
13	chr3:56825400-56831800	Weak transcription	NHEK	skin
14	chr3:56825600-56830000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:56825600-56830400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:56825600-56832400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:56825800-56830400	Weak transcription	Lung	lung
18	chr3:56826400-56833200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:56826600-56830000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:56826600-56830600	Weak transcription	Gastric	stomach
21	chr3:56826600-56830600	Weak transcription	Ovary	ovary
22	chr3:56826600-56831000	Weak transcription	Spleen	Spleen
23	chr3:56826600-56831800	Weak transcription	Psoas Muscle	Psoas
24	chr3:56826800-56830000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:56826800-56830200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:56826800-56830200	Weak transcription	Fetal Heart	heart
27	chr3:56826800-56830800	Weak transcription	Brain Anterior Caudate	brain
28	chr3:56827400-56834400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:56827600-56831200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:56827800-56831200	Enhancers	Pancreas	Pancrea
31	chr3:56828000-56830200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr3:56828000-56830200	Genic enhancers	Dnd41	blood
33	chr3:56828000-56830600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:56828000-56830600	Genic enhancers	Thymus	Thymus
35	chr3:56828000-56831000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr3:56828200-56832400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:56828400-56830600	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr3:56828600-56831400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr3:56828800-56830000	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr3:56828800-56830400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr3:56829000-56830000	Enhancers	Right Atrium	heart
42	chr3:56829000-56830200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:56829000-56830400	Enhancers	HUVEC	blood vessel
44	chr3:56829000-56830600	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr3:56829000-56830800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:56829000-56830800	Enhancers	Adipose Nuclei	Adipose
47	chr3:56829000-56831000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:56829000-56831000	Enhancers	Fetal Lung	lung
49	chr3:56829000-56831000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr3:56829000-56831200	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links