Variant report

Variant	rs17216789
Chromosome Location	chr3:56835012-56835013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:56715514..56718317-chr3:56833414..56836251,4	MCF-7	breast:
2	chr3:56716275..56717973-chr3:56833928..56836671,2	K562	blood:
3	chr3:56833930..56835654-chr3:56847983..56850097,2	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12632965	0.81[ASN][1000 genomes]
rs12638861	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56832000-56835800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:56832200-56835400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr3:56832200-56835400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr3:56832400-56836200	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr3:56832400-56836200	Active TSS	Primary T cells fromperipheralblood	blood
6	chr3:56832400-56836200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:56832400-56836600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr3:56832800-56836400	Active TSS	Thymus	Thymus
9	chr3:56832800-56836600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:56833000-56835600	Flanking Active TSS	HUVEC	blood vessel
11	chr3:56833000-56836400	Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr3:56833000-56836400	Active TSS	HMEC	breast
13	chr3:56833200-56835400	Flanking Active TSS	NHEK	skin
14	chr3:56833200-56836000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:56833400-56835400	Weak transcription	Aorta	Aorta
16	chr3:56833400-56836200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:56833400-56836600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:56833600-56835200	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr3:56833600-56835200	Weak transcription	A549	lung
20	chr3:56833800-56835400	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr3:56833800-56835400	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr3:56834000-56835200	Weak transcription	Hela-S3	cervix
23	chr3:56834000-56835400	Flanking Active TSS	Fetal Brain Female	brain
24	chr3:56834000-56835800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:56834200-56835200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:56834200-56835200	Flanking Active TSS	GM12878-XiMat	blood
27	chr3:56834200-56835400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
28	chr3:56834200-56835400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:56834200-56835400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:56834200-56835400	Flanking Active TSS	Fetal Thymus	thymus
31	chr3:56834200-56835600	Flanking Active TSS	Brain Angular Gyrus	brain
32	chr3:56834200-56835600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr3:56834200-56835600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr3:56834200-56835800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr3:56834200-56835800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr3:56834400-56835200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
37	chr3:56834400-56835200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr3:56834400-56835200	Active TSS	Colonic Mucosa	Colon
39	chr3:56834400-56835200	Flanking Active TSS	Fetal Heart	heart
40	chr3:56834400-56835400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:56834400-56835400	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr3:56834400-56835600	Flanking Active TSS	Primary B cells from peripheral blood	blood
43	chr3:56834400-56835600	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr3:56834400-56835600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:56834400-56835800	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr3:56834400-56836400	Active TSS	Ovary	ovary
47	chr3:56834400-56836600	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr3:56834400-56836600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:56834400-56836600	Active TSS	NHLF	lung
50	chr3:56834400-56836800	Flanking Active TSS	Fetal Muscle Leg	muscle

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