Variant report

Variant	rs9858436
Chromosome Location	chr3:21450449-21450450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21448531..21452327-chr3:21453436..21457568,4	K562	blood:
2	chr3:21446128..21447988-chr3:21449593..21451314,2	K562	blood:

Variant related genes	Relation type
ENSG00000236380	Chromatin interaction
ENSG00000272511	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1055766	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1319770	0.88[ASN][1000 genomes]
rs13319578	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1507815	0.88[AFR][1000 genomes]
rs1507816	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17008534	0.90[AFR][1000 genomes]
rs1865716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28475227	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35293621	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs394695	0.85[ASN][1000 genomes]
rs395743	0.93[ASN][1000 genomes]
rs61164437	0.88[AFR][1000 genomes]
rs9815329	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9826023	0.86[AFR][1000 genomes]
rs9835301	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9844163	0.90[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9861062	0.82[AFR][1000 genomes]
rs9868180	0.87[ASN][1000 genomes]
rs9872314	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9874326	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9874469	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21435400-21451800	Weak transcription	Aorta	Aorta

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