Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10066573	1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10068543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10514870	0.89[CHB][hapmap];0.92[GIH][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap]
rs1077183	0.81[MEX][hapmap]
rs12654485	0.87[CEU][hapmap]
rs13175380	0.81[EUR][1000 genomes]
rs13183985	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17720639	0.89[JPT][hapmap]
rs17776879	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2021775	1.00[CEU][hapmap]
rs33927508	0.87[CEU][hapmap]
rs35859105	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6450501	0.90[EUR][1000 genomes]
rs6450502	1.00[CEU][hapmap];0.82[GIH][hapmap];0.84[MEX][hapmap];0.90[EUR][1000 genomes]
rs6864156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6889456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71626132	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71626133	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7707541	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830313	chr5:58273724-58421098	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58376400-58389200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:58376400-58390400	Weak transcription	Hela-S3	cervix
3	chr5:58378200-58391800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:58386200-58388400	Enhancers	Colon Smooth Muscle	Colon
5	chr5:58386400-58390200	Weak transcription	Fetal Brain Male	brain
6	chr5:58386400-58391000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:58386600-58388400	Weak transcription	Fetal Kidney	kidney
8	chr5:58387200-58388400	Weak transcription	Fetal Heart	heart
9	chr5:58387200-58388600	Weak transcription	Small Intestine	intestine
10	chr5:58387600-58388400	Enhancers	Rectal Smooth Muscle	rectum
11	chr5:58387800-58394600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:58388000-58388400	Enhancers	HepG2	liver
13	chr5:58388000-58388400	Weak transcription	NHEK	skin
14	chr5:58388000-58388600	Enhancers	Primary T cells from cord blood	blood
15	chr5:58388000-58389200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr5:58388000-58389400	Active TSS	NHLF	lung
17	chr5:58388200-58388400	Enhancers	Duodenum Mucosa	Duodenum
18	chr5:58388200-58388600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:58388200-58389200	Flanking Active TSS	Fetal Lung	lung
20	chr5:58388200-58389200	Active TSS	A549	lung
21	chr5:58388200-58389400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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