Variant report

Variant	rs13175380
Chromosome Location	chr5:58247180-58247181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10066573	0.84[EUR][1000 genomes]
rs10068543	0.87[EUR][1000 genomes]
rs1077183	0.80[AMR][1000 genomes]
rs11950495	0.85[AMR][1000 genomes]
rs12651964	0.85[AMR][1000 genomes]
rs12656462	0.85[AMR][1000 genomes]
rs12657171	0.84[AMR][1000 genomes]
rs13170853	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13183985	0.81[EUR][1000 genomes]
rs6450501	0.84[EUR][1000 genomes]
rs6450502	0.84[EUR][1000 genomes]
rs6864156	0.87[EUR][1000 genomes]
rs6889456	0.87[EUR][1000 genomes]
rs71626132	0.87[EUR][1000 genomes]
rs71626133	0.87[EUR][1000 genomes]
rs986067	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58239600-58251800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:58240000-58254200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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