Variant report

Variant	rs11950495
Chromosome Location	chr5:58265250-58265251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1077183	0.81[AMR][1000 genomes]
rs11956738	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12655332	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12657171	0.85[AMR][1000 genomes]
rs13170853	0.80[AMR][1000 genomes]
rs13175380	0.85[AMR][1000 genomes]
rs62356612	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62356653	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58255200-58270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:58259600-58266800	Weak transcription	HSMM	muscle
3	chr5:58260200-58270200	Weak transcription	HSMMtube	muscle
4	chr5:58262000-58268800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:58262400-58269000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:58262400-58273400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:58262800-58268200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:58263200-58270000	Weak transcription	Small Intestine	intestine
9	chr5:58263200-58271400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:58263800-58270000	Weak transcription	Left Ventricle	heart
11	chr5:58263800-58270200	Weak transcription	Brain Angular Gyrus	brain
12	chr5:58264000-58270200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:58264000-58270200	Weak transcription	Gastric	stomach
14	chr5:58264200-58270000	Weak transcription	Fetal Brain Female	brain
15	chr5:58264400-58266800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:58264400-58270000	Genic enhancers	A549	lung
17	chr5:58264600-58270200	Weak transcription	Spleen	Spleen
18	chr5:58264800-58268000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:58265000-58265400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr5:58265000-58265400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr5:58265000-58267000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:58265000-58268400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr5:58265000-58268600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr5:58265200-58265400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:58265200-58266400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr5:58265200-58270200	Enhancers	Pancreatic Islets	Pancreatic Islet

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