Variant report

Variant	rs12655332
Chromosome Location	chr5:58257652-58257653
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10035437	0.82[AFR][1000 genomes]
rs10036445	0.87[AFR][1000 genomes]
rs10037052	0.87[AFR][1000 genomes]
rs10037076	0.87[AFR][1000 genomes]
rs10037958	0.81[AFR][1000 genomes]
rs10039572	0.80[AFR][1000 genomes]
rs10041537	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs10043767	0.87[AFR][1000 genomes]
rs10051847	0.83[ASW][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10055954	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs10058977	0.84[AFR][1000 genomes]
rs10059152	0.87[AFR][1000 genomes]
rs10069162	0.82[AFR][1000 genomes]
rs10069993	0.81[AFR][1000 genomes]
rs10071088	0.83[ASW][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs10071774	0.87[AFR][1000 genomes]
rs10075508	0.82[AFR][1000 genomes]
rs10077740	0.82[AFR][1000 genomes]
rs10471462	0.87[AFR][1000 genomes]
rs10472077	0.87[AFR][1000 genomes]
rs10472078	0.87[AFR][1000 genomes]
rs10472079	0.87[AFR][1000 genomes]
rs10472080	0.87[AFR][1000 genomes]
rs10472081	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs10472082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs10514870	0.81[MEX][hapmap]
rs1077183	0.81[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs10940636	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs11950492	0.83[ASW][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs11950495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951359	0.83[ASW][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs11952840	0.82[AFR][1000 genomes]
rs11952875	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs11956001	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs11956738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957040	0.80[AFR][1000 genomes]
rs11959349	0.83[ASW][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs12332133	0.84[AFR][1000 genomes]
rs12651964	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12653432	0.87[AFR][1000 genomes]
rs12655347	0.82[AFR][1000 genomes]
rs12656462	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12656661	0.81[AFR][1000 genomes]
rs12657171	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap]
rs12658211	0.82[AFR][1000 genomes]
rs12658790	0.86[AFR][1000 genomes]
rs12697167	0.90[AFR][1000 genomes]
rs13160982	0.87[AFR][1000 genomes]
rs13173189	0.87[AFR][1000 genomes]
rs13173495	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs13177216	0.84[AFR][1000 genomes]
rs13177592	0.87[AFR][1000 genomes]
rs13181433	0.83[AFR][1000 genomes]
rs13183589	0.81[AFR][1000 genomes]
rs13185339	0.87[AFR][1000 genomes]
rs13188077	0.80[AFR][1000 genomes]
rs13189993	0.87[AFR][1000 genomes]
rs13190178	0.87[AFR][1000 genomes]
rs13190308	0.87[AFR][1000 genomes]
rs3763083	0.82[AFR][1000 genomes]
rs3763084	0.83[ASW][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs4279299	0.82[AFR][1000 genomes]
rs4320218	0.87[AFR][1000 genomes]
rs4333273	0.86[AFR][1000 genomes]
rs62356612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6864156	0.82[MEX][hapmap]
rs9292182	0.92[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58255200-58259200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:58255200-58259400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:58255200-58270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:58256000-58258000	Enhancers	A549	lung
5	chr5:58257200-58258200	Enhancers	GM12878-XiMat	blood

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