The 2.0 version of rSNPBase

Variant report

Variant rs10075508
Chromosome Location chr5:58268853-58268854
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58255200-58270200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr5:58260200-58270200 Weak transcription HSMMtube muscle
3 chr5:58262400-58269000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr5:58262400-58273400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr5:58263200-58270000 Weak transcription Small Intestine intestine
6 chr5:58263200-58271400 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr5:58263800-58270000 Weak transcription Left Ventricle heart
8 chr5:58263800-58270200 Weak transcription Brain Angular Gyrus brain
9 chr5:58264000-58270200 Weak transcription Fetal Adrenal Gland Adrenal Gland
10 chr5:58264000-58270200 Weak transcription Gastric stomach
11 chr5:58264200-58270000 Weak transcription Fetal Brain Female brain
12 chr5:58264400-58270000 Genic enhancers A549 lung
13 chr5:58264600-58270200 Weak transcription Spleen Spleen
14 chr5:58265200-58270200 Enhancers Pancreatic Islets Pancreatic Islet
15 chr5:58265400-58270200 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr5:58265600-58276600 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr5:58265800-58270000 Weak transcription Psoas Muscle Psoas
18 chr5:58265800-58276200 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr5:58266000-58287600 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr5:58266800-58269000 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr5:58266800-58269800 Weak transcription Fetal Brain Male brain
22 chr5:58266800-58270000 Weak transcription Fetal Muscle Leg muscle
23 chr5:58266800-58281200 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr5:58267000-58269000 Weak transcription Fetal Lung lung
25 chr5:58267000-58269200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr5:58267000-58269800 Weak transcription Brain Anterior Caudate brain
27 chr5:58267000-58270000 Weak transcription HUES64 Cell Line embryonic stem cell
28 chr5:58267000-58270000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr5:58267000-58270000 Weak transcription Brain Substantia Nigra brain
30 chr5:58267000-58270200 Weak transcription Esophagus oesophagus
31 chr5:58267200-58269000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr5:58267200-58269400 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr5:58267200-58270000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr5:58267400-58269000 Weak transcription Primary hematopoietic stem cells blood
35 chr5:58267400-58269000 Weak transcription Colon Smooth Muscle Colon
36 chr5:58267400-58269000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr5:58267400-58269000 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr5:58267400-58269200 Weak transcription Duodenum Mucosa Duodenum
39 chr5:58267400-58270000 Weak transcription Primary monocytes fromperipheralblood blood
40 chr5:58267400-58270000 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr5:58267400-58270200 Weak transcription Thymus Thymus
42 chr5:58267400-58273000 Strong transcription Hela-S3 cervix
43 chr5:58267600-58269000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr5:58267600-58269200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr5:58267600-58269200 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr5:58267600-58269200 Weak transcription Fetal Kidney kidney
47 chr5:58267600-58269400 Weak transcription Stomach Smooth Muscle stomach
48 chr5:58267600-58269800 Weak transcription Primary T helper naive cells fromperipheralblood blood
49 chr5:58267600-58270000 Weak transcription Primary B cells from cord blood blood
50 chr5:58267600-58270000 Weak transcription Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015