Variant report

Variant	rs62356612
Chromosome Location	chr5:58236555-58236556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:58225563..58228121-chr5:58234226..58236677,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10035437	0.80[AFR][1000 genomes]
rs10036445	0.86[AFR][1000 genomes]
rs10037052	0.86[AFR][1000 genomes]
rs10037076	0.86[AFR][1000 genomes]
rs10041537	0.80[AFR][1000 genomes]
rs10043767	0.86[AFR][1000 genomes]
rs10051847	0.82[AFR][1000 genomes]
rs10055954	0.80[AFR][1000 genomes]
rs10058977	0.83[AFR][1000 genomes]
rs10059152	0.86[AFR][1000 genomes]
rs10069162	0.80[AFR][1000 genomes]
rs10069993	0.82[AFR][1000 genomes]
rs10071088	0.86[AFR][1000 genomes]
rs10071774	0.86[AFR][1000 genomes]
rs10075508	0.80[AFR][1000 genomes]
rs10077740	0.80[AFR][1000 genomes]
rs10471462	0.86[AFR][1000 genomes]
rs10472077	0.86[AFR][1000 genomes]
rs10472078	0.86[AFR][1000 genomes]
rs10472079	0.86[AFR][1000 genomes]
rs10472080	0.86[AFR][1000 genomes]
rs10472081	0.80[AFR][1000 genomes]
rs10940636	0.80[AFR][1000 genomes]
rs11950492	0.86[AFR][1000 genomes]
rs11950495	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11951359	0.82[AFR][1000 genomes]
rs11952840	0.80[AFR][1000 genomes]
rs11952875	0.80[AFR][1000 genomes]
rs11956001	0.86[AFR][1000 genomes]
rs11956738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11957040	0.82[AFR][1000 genomes]
rs11959349	0.86[AFR][1000 genomes]
rs12332133	0.83[AFR][1000 genomes]
rs12651964	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12653432	0.86[AFR][1000 genomes]
rs12655332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12655347	0.80[AFR][1000 genomes]
rs12656462	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12656661	0.82[AFR][1000 genomes]
rs12658211	0.80[AFR][1000 genomes]
rs12658790	0.87[AFR][1000 genomes]
rs12697167	0.92[AFR][1000 genomes]
rs13160982	0.86[AFR][1000 genomes]
rs13173189	0.86[AFR][1000 genomes]
rs13173495	0.82[AFR][1000 genomes]
rs13177216	0.83[AFR][1000 genomes]
rs13177592	0.86[AFR][1000 genomes]
rs13181433	0.85[AFR][1000 genomes]
rs13183589	0.82[AFR][1000 genomes]
rs13185339	0.86[AFR][1000 genomes]
rs13189993	0.86[AFR][1000 genomes]
rs13190178	0.86[AFR][1000 genomes]
rs13190308	0.86[AFR][1000 genomes]
rs3763083	0.80[AFR][1000 genomes]
rs3763084	0.80[AFR][1000 genomes]
rs4279299	0.80[AFR][1000 genomes]
rs4320218	0.89[AFR][1000 genomes]
rs4333273	0.87[AFR][1000 genomes]
rs9292182	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58234600-58239200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:58234800-58237800	Weak transcription	K562	blood
3	chr5:58234800-58238800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:58235600-58237000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:58235800-58237000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:58235800-58237600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:58236000-58237200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:58236200-58236600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:58236200-58236600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:58236200-58236600	Enhancers	Adipose Nuclei	Adipose
11	chr5:58236200-58236600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr5:58236200-58237000	Enhancers	HSMM	muscle
13	chr5:58236200-58237000	Enhancers	Osteobl	bone
14	chr5:58236200-58237400	Enhancers	HSMMtube	muscle
15	chr5:58236400-58236600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:58236400-58236600	Enhancers	Brain Cingulate Gyrus	brain
17	chr5:58236400-58236600	Enhancers	Pancreas	Pancrea
18	chr5:58236400-58237400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links