Variant report

Variant	rs9863590
Chromosome Location	chr3:161116445-161116446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10804790	0.83[EUR][1000 genomes]
rs1382427	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1382428	0.83[EUR][1000 genomes]
rs1478565	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1600209	0.83[EUR][1000 genomes]
rs163327	0.81[CEU][hapmap]
rs163328	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs17411201	0.90[ASN][1000 genomes]
rs189270	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1993891	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs28515190	0.82[EUR][1000 genomes]
rs336541	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs336543	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs336548	0.83[EUR][1000 genomes]
rs336549	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs336551	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs336561	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs336567	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs336569	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs336570	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs336572	0.88[CEU][hapmap]
rs336577	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs336579	0.87[EUR][1000 genomes]
rs336580	0.88[CEU][hapmap]
rs336583	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs336585	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs336586	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs336589	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs336590	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs336591	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs336593	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs339101	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs339114	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3849524	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4273380	0.93[CEU][hapmap]
rs4370045	0.92[CEU][hapmap]
rs4414866	0.81[CEU][hapmap]
rs4493449	0.93[CEU][hapmap]
rs455386	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs456611	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs457272	0.88[EUR][1000 genomes]
rs459697	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4597724	0.92[CEU][hapmap]
rs460165	0.83[EUR][1000 genomes]
rs460508	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs461638	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs462413	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs463928	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs464766	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs465985	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs466399	0.83[EUR][1000 genomes]
rs466626	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62279921	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441373	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs6765269	0.92[CEU][hapmap]
rs6775627	0.92[CEU][hapmap]
rs6794601	0.92[CEU][hapmap]
rs7615592	0.93[CEU][hapmap]
rs7623206	0.93[CEU][hapmap]
rs7631479	0.96[CEU][hapmap]
rs7638668	0.83[EUR][1000 genomes]
rs7647327	0.81[EUR][1000 genomes]
rs7653233	0.80[EUR][1000 genomes]
rs7653259	0.90[ASN][1000 genomes]
rs7653361	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs975323	0.82[EUR][1000 genomes]
rs9790314	0.81[EUR][1000 genomes]
rs9821201	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs9842676	0.90[ASN][1000 genomes]
rs9850455	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs9861165	0.90[ASN][1000 genomes]
rs9862544	0.90[ASN][1000 genomes]
rs9870059	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs9872514	0.93[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161113600-161118000	Weak transcription	Liver	Liver
2	chr3:161113600-161118000	Weak transcription	HepG2	liver
3	chr3:161113600-161127600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links