Variant report

Variant	rs9863662
Chromosome Location	chr3:79142813-79142814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12495750	0.84[ASW][hapmap]
rs1374883	0.84[ASW][hapmap]
rs4680953	0.84[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap]
rs6764276	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6804846	0.82[AFR][1000 genomes]
rs7625358	0.92[YRI][hapmap]
rs7628994	0.84[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834745	chr3:79055426-79227937	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv979851	chr3:79138392-79143025	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79138000-79147200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:79141400-79157200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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