Variant report

Variant	rs4680953
Chromosome Location	chr3:79127010-79127011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12495750	1.00[ASW][hapmap]
rs1350104	1.00[AMR][1000 genomes]
rs1374883	1.00[ASW][hapmap]
rs4068897	0.84[ASW][hapmap]
rs4234349	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4680952	1.00[AMR][1000 genomes]
rs6764276	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs6793514	1.00[AMR][1000 genomes]
rs6804846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7615922	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7625358	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7628994	1.00[ASW][hapmap];0.81[YRI][hapmap]
rs7646680	0.81[YRI][hapmap]
rs9847749	0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863662	0.84[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834745	chr3:79055426-79227937	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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