Variant report

Variant	rs9863799
Chromosome Location	chr3:48982473-48982474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48981034..48982977-chr3:49056933..49058838,2	K562	blood:

Variant related genes	Relation type
ENSG00000178057	Chromatin interaction
ENSG00000199032	Chromatin interaction
ENSG00000207605	Chromatin interaction
ENSG00000178149	Chromatin interaction

rs_ID	r²[population]
rs12330654	1.00[AFR][1000 genomes]
rs13434338	1.00[AFR][1000 genomes]
rs28864123	0.86[AFR][1000 genomes]
rs61760207	0.86[AFR][1000 genomes]
rs9869156	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9878262	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9882667	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:48962000-49000400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:48965200-49004200	Weak transcription	Colonic Mucosa	Colon
4	chr3:48965400-49000000	Weak transcription	Esophagus	oesophagus
5	chr3:48965800-48995400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:48965800-49000000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:48965800-49004000	Weak transcription	Fetal Brain Male	brain
8	chr3:48966000-48986000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:48966000-49008000	Weak transcription	Fetal Kidney	kidney
10	chr3:48966600-48986200	Weak transcription	NHLF	lung
11	chr3:48966800-48986200	Weak transcription	HMEC	breast
12	chr3:48967400-48994800	Weak transcription	Gastric	stomach
13	chr3:48967600-48983400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:48968000-48997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:48968200-48997200	Weak transcription	NHDF-Ad	bronchial
16	chr3:48970400-48984000	Weak transcription	Brain Angular Gyrus	brain
17	chr3:48970400-49004400	Weak transcription	Pancreas	Pancrea
18	chr3:48970600-48991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:48970800-48986600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:48970800-48991000	Weak transcription	Lung	lung
21	chr3:48970800-49002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:48971000-48994800	Weak transcription	Spleen	Spleen
23	chr3:48971400-48986200	Weak transcription	Brain Anterior Caudate	brain
24	chr3:48971400-48991000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:48971400-48991000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:48971600-48993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:48972000-49000400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr3:48972200-48982600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr3:48972400-48991200	Weak transcription	Adipose Nuclei	Adipose
30	chr3:48972400-48995400	Weak transcription	Brain Germinal Matrix	brain
31	chr3:48972400-48995400	Weak transcription	Ovary	ovary
32	chr3:48972800-48991200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:48973000-48983000	Weak transcription	Fetal Lung	lung
34	chr3:48973400-48983400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:48973400-48986200	Weak transcription	Brain Substantia Nigra	brain
36	chr3:48973400-48986600	Weak transcription	NH-A	brain
37	chr3:48973400-48986800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:48973400-48991400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:48973400-48994800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr3:48973600-48997600	Weak transcription	Osteobl	bone
41	chr3:48974600-48990400	Weak transcription	Fetal Intestine Small	intestine
42	chr3:48974800-48991400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr3:48975000-48983400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:48975000-48983600	Weak transcription	Brain Hippocampus Middle	brain
45	chr3:48975000-48991200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:48975000-48999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:48975200-48991800	Weak transcription	HUVEC	blood vessel
48	chr3:48975400-48990800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:48975800-48983200	Weak transcription	Primary B cells from cord blood	blood
50	chr3:48976000-48982600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links