Variant report

Variant	rs9869156
Chromosome Location	chr3:48983517-48983518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs12330654	1.00[AFR][1000 genomes]
rs13434338	1.00[AFR][1000 genomes]
rs28864123	0.86[AFR][1000 genomes]
rs61760207	0.86[AFR][1000 genomes]
rs9863799	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9878262	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs9882667	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:48962000-49000400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:48965200-49004200	Weak transcription	Colonic Mucosa	Colon
4	chr3:48965400-49000000	Weak transcription	Esophagus	oesophagus
5	chr3:48965800-48995400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:48965800-49000000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:48965800-49004000	Weak transcription	Fetal Brain Male	brain
8	chr3:48966000-48986000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:48966000-49008000	Weak transcription	Fetal Kidney	kidney
10	chr3:48966600-48986200	Weak transcription	NHLF	lung
11	chr3:48966800-48986200	Weak transcription	HMEC	breast
12	chr3:48967400-48994800	Weak transcription	Gastric	stomach
13	chr3:48968000-48997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:48968200-48997200	Weak transcription	NHDF-Ad	bronchial
15	chr3:48970400-48984000	Weak transcription	Brain Angular Gyrus	brain
16	chr3:48970400-49004400	Weak transcription	Pancreas	Pancrea
17	chr3:48970600-48991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:48970800-48986600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:48970800-48991000	Weak transcription	Lung	lung
20	chr3:48970800-49002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:48971000-48994800	Weak transcription	Spleen	Spleen
22	chr3:48971400-48986200	Weak transcription	Brain Anterior Caudate	brain
23	chr3:48971400-48991000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:48971400-48991000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:48971600-48993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:48972000-49000400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr3:48972400-48991200	Weak transcription	Adipose Nuclei	Adipose
28	chr3:48972400-48995400	Weak transcription	Brain Germinal Matrix	brain
29	chr3:48972400-48995400	Weak transcription	Ovary	ovary
30	chr3:48972800-48991200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:48973400-48986200	Weak transcription	Brain Substantia Nigra	brain
32	chr3:48973400-48986600	Weak transcription	NH-A	brain
33	chr3:48973400-48986800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:48973400-48991400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:48973400-48994800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:48973600-48997600	Weak transcription	Osteobl	bone
37	chr3:48974600-48990400	Weak transcription	Fetal Intestine Small	intestine
38	chr3:48974800-48991400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:48975000-48983600	Weak transcription	Brain Hippocampus Middle	brain
40	chr3:48975000-48991200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:48975000-48999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr3:48975200-48991800	Weak transcription	HUVEC	blood vessel
43	chr3:48975400-48990800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:48976000-48987000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:48976200-48983800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr3:48976200-48987000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:48976400-48989800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:48979000-49007600	Weak transcription	Stomach Mucosa	stomach
49	chr3:48979600-48984800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:48980400-48983600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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