Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11130416	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs11130417	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4928040	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs6445639	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6445645	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6445648	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs6784315	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs6804595	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7427630	0.85[CHB][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7429094	0.94[CEU][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7431577	0.94[CEU][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7434239	0.81[EUR][1000 genomes]
rs7627905	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7630541	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7632823	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7652209	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs9683195	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs9849660	0.94[CEU][hapmap];0.80[YRI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9874561	0.88[AFR][1000 genomes]
rs9879885	0.94[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54328600-54331000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:54328800-54330800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:54330200-54331200	Enhancers	Brain Germinal Matrix	brain

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