Variant report
Variant | rs9865061 |
---|---|
Chromosome Location | chr3:21106260-21106261 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11128983 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13097458 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs1391138 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1497516 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4306882 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4431129 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4431130 | 0.86[ASN][1000 genomes] |
rs4465961 | 0.82[ASN][1000 genomes] |
rs4858288 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6550561 | 0.83[ASN][1000 genomes] |
rs7625772 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7633632 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7644744 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7652147 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs869494 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs869495 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs973870 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9811079 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9850499 | 0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs985536 | 1.00[ASN][1000 genomes] |
rs9881998 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv876608 | chr3:21008710-21203048 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv998068 | chr3:21050191-21212603 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | esv2422219 | chr3:21064893-21220097 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv589880 | chr3:21083096-21144601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | nsv589881 | chr3:21083096-21173989 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | nsv460463 | chr3:21083096-21179332 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | nsv589882 | chr3:21083096-21179332 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
8 | nsv470472 | chr3:21087219-21179332 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv1007599 | chr3:21089648-21212603 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
10 | nsv1003715 | chr3:21093734-21241656 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
11 | nsv1012561 | chr3:21095169-21241656 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:21086800-21108800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr3:21101400-21106800 | Weak transcription | Aorta | Aorta |
3 | chr3:21104600-21108600 | Weak transcription | Fetal Lung | lung |