Variant report

Variant	rs9869102
Chromosome Location	chr3:141138833-141138834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141119613..141122470-chr3:141135749..141139240,4	MCF-7	breast:
2	chr3:141134135..141137819-chr3:141137972..141141592,4	K562	blood:
3	chr3:141123064..141125479-chr3:141137603..141140380,2	MCF-7	breast:
4	chr3:141138083..141140957-chr3:141173553..141175424,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513137	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919595	1.00[CEU][hapmap]
rs1344673	1.00[CEU][hapmap]
rs16851397	1.00[CEU][hapmap]
rs16851412	0.85[JPT][hapmap]
rs56339671	0.97[EUR][1000 genomes]
rs59075313	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6440007	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762826	0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6776991	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810158	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9822817	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9825379	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs9856584	0.80[JPT][hapmap];0.81[EUR][1000 genomes]
rs9858405	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131200-141139200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:141131600-141144400	Strong transcription	Fetal Intestine Large	intestine
3	chr3:141131600-141145200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:141131800-141144600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
6	chr3:141132200-141141000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:141132200-141144400	Strong transcription	Fetal Intestine Small	intestine
8	chr3:141132200-141144800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
10	chr3:141132400-141139000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:141132600-141139000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:141132600-141139200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:141133000-141139000	Genic enhancers	Right Ventricle	heart
14	chr3:141133600-141139000	Strong transcription	Fetal Muscle Leg	muscle
15	chr3:141133600-141139200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:141133600-141140600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:141133800-141140400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr3:141133800-141140600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:141133800-141158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:141133800-141158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:141134000-141146800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
23	chr3:141134200-141139000	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr3:141134200-141139000	Weak transcription	Small Intestine	intestine
25	chr3:141134200-141145200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
27	chr3:141134400-141139200	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr3:141134400-141140600	Weak transcription	Esophagus	oesophagus
29	chr3:141134600-141144400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:141134600-141144600	Weak transcription	Liver	Liver
31	chr3:141134600-141148000	Weak transcription	Brain Germinal Matrix	brain
32	chr3:141134800-141139400	Strong transcription	Osteobl	bone
33	chr3:141134800-141142200	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr3:141135200-141144600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:141135400-141144000	Weak transcription	Fetal Kidney	kidney
36	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:141135800-141139000	Strong transcription	Duodenum Mucosa	Duodenum
38	chr3:141135800-141139000	Strong transcription	NHLF	lung
39	chr3:141136000-141139600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr3:141136000-141144600	Weak transcription	K562	blood
41	chr3:141136200-141139000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:141136200-141139000	Weak transcription	Psoas Muscle	Psoas
43	chr3:141136200-141139200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:141136200-141140800	Weak transcription	Fetal Brain Female	brain
45	chr3:141136200-141144600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr3:141136200-141144800	Weak transcription	Colonic Mucosa	Colon
47	chr3:141136400-141139000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:141136400-141142000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:141136400-141144400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr3:141136400-141145000	Weak transcription	Primary hematopoietic stem cells	blood

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