Variant report

Variant	rs9869319
Chromosome Location	chr3:145762707-145762708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11916662	1.00[AMR][1000 genomes]
rs11917712	1.00[AMR][1000 genomes]
rs11917774	1.00[AMR][1000 genomes]
rs11917816	1.00[AMR][1000 genomes]
rs11919826	1.00[AMR][1000 genomes]
rs11925421	1.00[AMR][1000 genomes]
rs12171307	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1375579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375586	1.00[ASN][1000 genomes]
rs1375589	1.00[ASN][1000 genomes]
rs1512898	1.00[AMR][1000 genomes]
rs1512899	1.00[AMR][1000 genomes]
rs1530742	1.00[ASN][1000 genomes]
rs1982381	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2055978	1.00[AMR][1000 genomes]
rs2669397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55721145	1.00[AMR][1000 genomes]
rs57931335	1.00[AMR][1000 genomes]
rs59713697	1.00[AMR][1000 genomes]
rs6440412	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440418	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6440420	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72989693	1.00[AMR][1000 genomes]
rs72996207	1.00[AMR][1000 genomes]
rs72996210	1.00[AMR][1000 genomes]
rs72996212	1.00[AMR][1000 genomes]
rs73865335	1.00[AMR][1000 genomes]
rs73865338	1.00[AMR][1000 genomes]
rs7626859	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7639115	1.00[ASN][1000 genomes]
rs895928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9830375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881770	1.00[ASN][1000 genomes]
rs9881772	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145739400-145768600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:145752400-145768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:145752600-145767600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:145752600-145775800	Weak transcription	Osteobl	bone
5	chr3:145752600-145776000	Weak transcription	HSMM	muscle
6	chr3:145762000-145762800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:145762600-145763600	Enhancers	HepG2	liver

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