Variant report

Variant	rs9871578
Chromosome Location	chr3:53666568-53666569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1401492	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3774492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3774519	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3774529	0.91[EUR][1000 genomes]
rs3774538	0.91[EUR][1000 genomes]
rs6784608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6792713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802129	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73840164	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53661400-53667200	Weak transcription	Fetal Intestine Large	intestine
3	chr3:53664000-53668600	Weak transcription	Gastric	stomach
4	chr3:53665000-53667600	Weak transcription	HepG2	liver
5	chr3:53665200-53667000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
6	chr3:53666400-53668200	Enhancers	Stomach Mucosa	stomach
7	chr3:53666400-53681400	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links