Variant report

Variant	rs9873629
Chromosome Location	chr3:84539000-84539001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11127851	0.82[EUR][1000 genomes]
rs11922036	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12487930	0.81[EUR][1000 genomes]
rs12637872	0.82[EUR][1000 genomes]
rs1384299	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1385658	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1471801	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1601442	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17198695	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2128325	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2128326	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2170531	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2170532	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2326029	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2326032	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2326034	0.81[EUR][1000 genomes]
rs2326035	0.82[EUR][1000 genomes]
rs3921869	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4413323	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4422325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4429646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4505713	0.82[EUR][1000 genomes]
rs4505714	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4549280	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4856531	0.86[EUR][1000 genomes]
rs55703357	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55954701	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6765419	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6768888	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6769407	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6781669	0.82[EUR][1000 genomes]
rs6791189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793136	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9817609	0.80[EUR][1000 genomes]
rs9821366	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9829414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9833528	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9850842	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9867810	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9868049	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007008	chr3:84069044-84653896	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv536612	chr3:84069044-84653896	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460743	chr3:84094818-84644186	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv590814	chr3:84094818-84644186	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv590848	chr3:84200533-84560784	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2760745	chr3:84208364-84783259	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1012551	chr3:84235733-84550197	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv536613	chr3:84235733-84550197	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv877082	chr3:84320674-84570758	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1013833	chr3:84382132-84556956	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1006527	chr3:84388635-84550197	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv590849	chr3:84479070-84574491	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv998578	chr3:84521514-84773582	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv536615	chr3:84521514-84773582	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv460744	chr3:84526413-84630305	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv590850	chr3:84526413-84630305	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84538800-84539000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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