Variant report

Variant	rs9875435
Chromosome Location	chr3:28720221-28720222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28719789..28721627-chr3:28725171..28727853,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10510614	0.83[ASN][1000 genomes]
rs11718080	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11925269	0.91[ASN][1000 genomes]
rs1381393	0.99[ASN][1000 genomes]
rs17021806	0.91[ASN][1000 genomes]
rs4258916	0.99[ASN][1000 genomes]
rs4315650	0.99[ASN][1000 genomes]
rs4530489	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4624524	0.99[ASN][1000 genomes]
rs4680775	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59333989	0.91[ASN][1000 genomes]
rs61287529	0.91[ASN][1000 genomes]
rs6549871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6549874	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6549878	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6549880	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6549881	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6804117	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73054642	0.91[ASN][1000 genomes]
rs73054682	0.83[ASN][1000 genomes]
rs73065090	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1001920	chr3:28711075-28788920	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9875435	DOCK7	trans	brain	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28709800-28723000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:28710000-28721200	Weak transcription	Psoas Muscle	Psoas
3	chr3:28712200-28721000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:28712400-28721400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:28716200-28721000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:28716400-28721200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:28716400-28721600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:28718600-28720400	Enhancers	Fetal Lung	lung
9	chr3:28719400-28721200	Weak transcription	Spleen	Spleen
10	chr3:28719600-28722800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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