Variant report

Variant	rs9876694
Chromosome Location	chr3:141152017-141152018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141151481..141154475-chr3:141171765..141174215,2	K562	blood:
2	chr3:141144979..141148149-chr3:141151413..141154524,4	K562	blood:
3	chr3:141151754..141154048-chr3:141748045..141749745,2	K562	blood:
4	chr3:141151417..141154656-chr3:141154781..141157026,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10513137	0.83[AFR][1000 genomes]
rs16851416	0.91[EUR][1000 genomes]
rs6762722	0.99[ASN][1000 genomes]
rs6776991	0.81[AFR][1000 genomes]
rs6802753	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73872720	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7638775	0.81[AFR][1000 genomes]
rs9825379	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9858405	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
2	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:141133800-141158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:141133800-141158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
6	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
7	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:141140800-141159200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:141141400-141154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:141145000-141154800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:141145000-141160000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:141145400-141152600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:141145400-141161200	Weak transcription	Fetal Brain Female	brain
14	chr3:141145400-141161800	Weak transcription	Esophagus	oesophagus
15	chr3:141145800-141155800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:141145800-141161600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:141146000-141160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:141146000-141160000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:141146000-141160000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:141146200-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:141146400-141153000	Weak transcription	Small Intestine	intestine
22	chr3:141146400-141155000	Weak transcription	Colonic Mucosa	Colon
23	chr3:141146600-141157600	Weak transcription	HSMMtube	muscle
24	chr3:141146600-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:141147000-141161200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:141147000-141161200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:141147200-141153200	Weak transcription	Ovary	ovary
28	chr3:141147400-141154800	Strong transcription	Fetal Intestine Large	intestine
29	chr3:141147400-141160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr3:141147800-141158400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:141148000-141153000	Genic enhancers	A549	lung
32	chr3:141148600-141160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:141148800-141152600	Strong transcription	GM12878-XiMat	blood
34	chr3:141148800-141157200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr3:141148800-141160000	Weak transcription	NHEK	skin
36	chr3:141148800-141161600	Weak transcription	Brain Germinal Matrix	brain
37	chr3:141148800-141161600	Weak transcription	Spleen	Spleen
38	chr3:141148800-141161800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr3:141148800-141164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr3:141149000-141158400	Weak transcription	HUVEC	blood vessel
41	chr3:141149400-141153200	Active TSS	Psoas Muscle	Psoas
42	chr3:141149400-141164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:141149600-141154800	Weak transcription	Stomach Mucosa	stomach
44	chr3:141149600-141155200	Weak transcription	Pancreas	Pancrea
45	chr3:141149600-141161200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:141149800-141155000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr3:141149800-141156000	Weak transcription	Fetal Muscle Leg	muscle
48	chr3:141149800-141157000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:141149800-141157000	Weak transcription	Fetal Stomach	stomach
50	chr3:141149800-141157400	Weak transcription	Fetal Muscle Trunk	muscle

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