Variant report

Variant	rs6802753
Chromosome Location	chr3:141145473-141145474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141145278..141146859-chr3:141148787..141150657,2	MCF-7	breast:
2	chr3:141142955..141145159-chr3:141145258..141147656,2	MCF-7	breast:
3	chr3:141144979..141148149-chr3:141151413..141154524,4	K562	blood:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10513137	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap]
rs1344672	0.84[JPT][hapmap]
rs1344674	0.84[JPT][hapmap]
rs16851412	0.83[JPT][hapmap]
rs16851416	0.95[EUR][1000 genomes]
rs2871960	0.84[JPT][hapmap]
rs6440003	0.84[JPT][hapmap]
rs6440006	0.84[JPT][hapmap]
rs6762722	1.00[ASN][1000 genomes]
rs6762826	1.00[CEU][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.92[TSI][hapmap]
rs6763927	0.83[JPT][hapmap]
rs6763931	0.83[JPT][hapmap]
rs6764769	0.84[JPT][hapmap]
rs6776991	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs724016	0.84[JPT][hapmap]
rs73872720	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624084	0.84[JPT][hapmap]
rs7632381	0.84[JPT][hapmap]
rs7653462	0.86[ASW][hapmap]
rs9825379	0.84[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9856584	0.84[JPT][hapmap]
rs9876694	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6802753	RPLP0	trans	brain	seeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
2	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:141133800-141158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:141133800-141158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:141134000-141146800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
7	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
8	chr3:141134600-141148000	Weak transcription	Brain Germinal Matrix	brain
9	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:141137600-141146400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:141138000-141152000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:141140800-141159200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:141141400-141145600	Weak transcription	Small Intestine	intestine
14	chr3:141141400-141146200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:141141400-141146400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:141141400-141154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:141141600-141146200	Weak transcription	Hela-S3	cervix
18	chr3:141143000-141145600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr3:141143000-141150800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:141143400-141151600	Enhancers	Fetal Heart	heart
21	chr3:141143600-141147200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:141143800-141145600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:141143800-141145600	Enhancers	Colon Smooth Muscle	Colon
24	chr3:141143800-141145800	Genic enhancers	HepG2	liver
25	chr3:141143800-141146600	Enhancers	NH-A	brain
26	chr3:141143800-141146800	Genic enhancers	Primary T cells fromperipheralblood	blood
27	chr3:141143800-141147000	Enhancers	Psoas Muscle	Psoas
28	chr3:141143800-141147200	Enhancers	Brain Angular Gyrus	brain
29	chr3:141143800-141147200	Genic enhancers	A549	lung
30	chr3:141143800-141147200	Genic enhancers	NHDF-Ad	bronchial
31	chr3:141143800-141147400	Genic enhancers	Osteobl	bone
32	chr3:141143800-141148000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr3:141144000-141146000	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr3:141144000-141146000	Enhancers	HMEC	breast
35	chr3:141144000-141146400	Enhancers	Fetal Kidney	kidney
36	chr3:141144000-141146600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr3:141144000-141147200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr3:141144200-141146400	Enhancers	Brain Hippocampus Middle	brain
39	chr3:141144200-141146400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:141144200-141146600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:141144200-141146800	Genic enhancers	HUVEC	blood vessel
42	chr3:141144200-141147000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:141144200-141147200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:141144200-141147200	Enhancers	Pancreas	Pancrea
45	chr3:141144200-141147400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:141144400-141145600	Enhancers	Adipose Nuclei	Adipose
47	chr3:141144400-141145600	Enhancers	Aorta	Aorta
48	chr3:141144400-141145600	Enhancers	Duodenum Mucosa	Duodenum
49	chr3:141144400-141145600	Enhancers	Spleen	Spleen
50	chr3:141144400-141145800	Enhancers	Lung	lung

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