Variant report

Variant	rs9877691
Chromosome Location	chr3:42761006-42761007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13320629	1.00[ASN][1000 genomes]
rs13320636	1.00[AMR][1000 genomes]
rs17074768	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17074770	1.00[ASN][1000 genomes]
rs2290974	1.00[ASN][1000 genomes]
rs28508577	1.00[AMR][1000 genomes]
rs28858178	1.00[AMR][1000 genomes]
rs57865869	1.00[AMR][1000 genomes]
rs6808227	1.00[ASN][1000 genomes]
rs9814373	1.00[AMR][1000 genomes]
rs9825860	1.00[ASN][1000 genomes]
rs9851176	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9879906	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42758400-42762000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:42759600-42762200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr3:42759800-42761600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:42760200-42761400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:42760200-42762000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:42760400-42761400	Enhancers	Fetal Heart	heart
7	chr3:42760400-42769600	Weak transcription	Right Atrium	heart
8	chr3:42760400-42773600	Enhancers	Brain Substantia Nigra	brain
9	chr3:42760600-42761200	Enhancers	Left Ventricle	heart
10	chr3:42760600-42761200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:42760600-42761800	Enhancers	Brain Anterior Caudate	brain
12	chr3:42760800-42761200	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:42760800-42761400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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