Variant report

Variant	rs17074768
Chromosome Location	chr3:42757830-42757831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13320629	1.00[ASN][1000 genomes]
rs13320636	1.00[AMR][1000 genomes]
rs17074770	1.00[ASN][1000 genomes]
rs2290974	1.00[ASN][1000 genomes]
rs28508577	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28858178	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56951149	0.84[AFR][1000 genomes]
rs57373619	0.87[AFR][1000 genomes]
rs57865869	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6808227	1.00[ASN][1000 genomes]
rs9811777	0.82[YRI][hapmap];0.87[AFR][1000 genomes]
rs9814373	1.00[AMR][1000 genomes]
rs9825860	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9851176	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9877691	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9879906	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42747800-42760200	Weak transcription	Right Atrium	heart
2	chr3:42754400-42760600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:42754600-42758400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr3:42754800-42760200	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links