Variant report

Variant	rs987826
Chromosome Location	chr14:37612674-37612675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37610927..37613306-chr14:37640197..37642903,2	MCF-7	breast:
2	chr14:37608441..37610002-chr14:37610883..37613279,2	K562	blood:

Variant related genes	Relation type
ENSG00000258708	Chromatin interaction
ENSG00000183032	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10135285	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs10150704	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1080374	0.86[EUR][1000 genomes]
rs11156934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11156935	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11620965	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11622236	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12879089	0.87[CEU][hapmap]
rs12883655	0.86[EUR][1000 genomes]
rs12883794	0.86[EUR][1000 genomes]
rs12884046	0.81[EUR][1000 genomes]
rs12893236	0.83[CEU][hapmap]
rs12895578	0.81[ASN][1000 genomes]
rs1950884	0.87[CEU][hapmap]
rs1955756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2093119	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs34123291	0.84[EUR][1000 genomes]
rs34301509	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34360521	0.84[EUR][1000 genomes]
rs61988264	0.86[EUR][1000 genomes]
rs6571791	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6571792	0.86[EUR][1000 genomes]
rs6571793	0.85[EUR][1000 genomes]
rs6571794	0.86[EUR][1000 genomes]
rs714229	0.86[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs714230	0.86[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7142673	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7143494	0.91[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs7143703	0.86[EUR][1000 genomes]
rs7143938	0.82[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7149939	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7151497	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7151519	0.81[EUR][1000 genomes]
rs7153180	0.95[CEU][hapmap]
rs7157361	0.86[EUR][1000 genomes]
rs7161425	0.87[CEU][hapmap]
rs8012018	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs8014303	0.86[EUR][1000 genomes]
rs8015843	0.86[EUR][1000 genomes]
rs8016262	0.86[EUR][1000 genomes]
rs8019549	0.86[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs910509	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv530038	chr14:37590543-38336191	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv915783	chr14:37607836-38002966	Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1036854	chr14:37609535-38013533	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv542045	chr14:37609535-38013533	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37609800-37614600	Weak transcription	K562	blood
2	chr14:37610400-37618200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:37611400-37612800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:37611400-37613000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:37611600-37613000	Enhancers	Fetal Muscle Leg	muscle
6	chr14:37611800-37612800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:37611800-37612800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:37611800-37613000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:37611800-37613000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:37611800-37613000	Enhancers	HMEC	breast
11	chr14:37611800-37613000	Enhancers	HSMMtube	muscle
12	chr14:37611800-37613000	Enhancers	NH-A	brain
13	chr14:37612000-37612800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:37612000-37612800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:37612000-37613000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:37612200-37612800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:37612200-37613400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:37612400-37612800	Flanking Active TSS	HSMM	muscle
19	chr14:37612400-37613000	Enhancers	NHDF-Ad	bronchial
20	chr14:37612600-37613400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr14:37612600-37614400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:37612600-37614600	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links