Variant report

Variant	rs9879028
Chromosome Location	chr3:89273019-89273020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11128072	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13083092	0.81[AFR][1000 genomes]
rs1398535	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1512912	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1567732	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17800641	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28885734	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4449340	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4857496	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6551409	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6770978	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6771336	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6771477	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7428532	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs872976	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs907712	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9310117	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9809011	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9809046	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9817310	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9837346	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9838512	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9853389	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9866945	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9867299	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9873281	0.81[AFR][1000 genomes]
rs9877953	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs994129	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834760	chr3:89085529-89299398	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997874	chr3:89188275-89279573	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89263600-89277000	Weak transcription	Brain Germinal Matrix	brain
2	chr3:89266400-89277800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:89271400-89277800	Weak transcription	Fetal Brain Female	brain
4	chr3:89271600-89277400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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