Variant report

Variant	rs907712
Chromosome Location	chr3:89326567-89326568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1040017	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs11128072	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11923303	0.82[EUR][1000 genomes]
rs13076853	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13088663	0.85[EUR][1000 genomes]
rs13100388	0.83[EUR][1000 genomes]
rs1398532	0.85[EUR][1000 genomes]
rs1398535	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512907	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1512910	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs1512912	0.96[CEU][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1567732	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17800641	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675360	0.83[EUR][1000 genomes]
rs28885734	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35173319	0.83[EUR][1000 genomes]
rs35448293	0.84[EUR][1000 genomes]
rs35511518	0.84[EUR][1000 genomes]
rs4449340	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4857496	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6551409	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6768381	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs6770978	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6771336	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6771477	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7428532	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7619025	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7644070	0.93[CEU][hapmap]
rs872976	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310117	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9310119	0.83[EUR][1000 genomes]
rs9310120	0.82[EUR][1000 genomes]
rs9310121	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9310122	0.81[EUR][1000 genomes]
rs954964	0.87[EUR][1000 genomes]
rs9809011	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9809046	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9811041	0.86[CEU][hapmap]
rs9817310	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9817553	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs9833400	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs9837346	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9838512	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9845870	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs9846844	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9853389	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866945	1.00[CEU][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9866959	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs9867299	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9877953	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9879028	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs994129	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990016	0.93[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89325000-89326800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr3:89325400-89327400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:89325400-89327400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:89325600-89326600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:89325600-89327200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:89325600-89327200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:89325600-89327400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:89326000-89327200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:89326000-89328200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:89326400-89326800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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