Variant report

Variant	rs1512907
Chromosome Location	chr3:89355961-89355962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1040017	0.81[CHB][hapmap]
rs11128072	0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11923303	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13076853	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13088663	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13100388	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1398532	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1398535	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1512910	0.81[CHB][hapmap]
rs1512912	0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1567732	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17800641	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28675360	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28885734	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35173319	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35448293	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35511518	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4449340	0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4857496	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6551409	0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6551410	0.86[CHB][hapmap]
rs6768381	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6770978	0.85[EUR][1000 genomes]
rs6771336	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6771477	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7428532	0.84[EUR][1000 genomes]
rs7619025	1.00[CHB][hapmap];0.80[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7644070	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs872976	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs907712	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9310117	0.84[EUR][1000 genomes]
rs9310119	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9310120	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9310121	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9310122	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs954964	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9809011	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9809046	0.84[EUR][1000 genomes]
rs9811041	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9817310	0.84[EUR][1000 genomes]
rs9817553	1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9833400	1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9837346	0.84[EUR][1000 genomes]
rs9838512	0.84[EUR][1000 genomes]
rs9846844	1.00[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9853389	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9866945	0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9866959	1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9877953	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs994129	0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9990016	1.00[CHB][hapmap];0.80[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590923	chr3:89336417-89417171	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89350800-89359200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:89355400-89356400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:89355400-89357000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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