Variant report

Variant	rs9310119
Chromosome Location	chr3:89378042-89378043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:89362727..89364940-chr3:89377326..89380080,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11128072	0.82[EUR][1000 genomes]
rs11923303	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13076853	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13088663	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13100388	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1398532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1398535	0.83[EUR][1000 genomes]
rs1512907	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1512912	0.81[EUR][1000 genomes]
rs1567732	0.82[EUR][1000 genomes]
rs17800551	0.86[CHD][hapmap]
rs17800641	0.82[EUR][1000 genomes]
rs17801001	0.93[CHD][hapmap]
rs28675360	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28885734	0.80[EUR][1000 genomes]
rs35173319	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35448293	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35511518	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4449340	0.83[EUR][1000 genomes]
rs4857496	0.81[EUR][1000 genomes]
rs4857497	0.86[CHD][hapmap]
rs4857502	0.86[CHD][hapmap]
rs6551409	0.81[EUR][1000 genomes]
rs6768381	0.88[ASW][hapmap];0.83[LWK][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6770978	0.80[EUR][1000 genomes]
rs6771336	0.81[EUR][1000 genomes]
rs6782527	0.87[CHD][hapmap]
rs7373232	0.86[CHD][hapmap]
rs7615949	0.93[CHD][hapmap]
rs7619025	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7644070	0.94[ASW][hapmap];0.95[LWK][hapmap];0.83[YRI][hapmap]
rs870898	0.93[CHD][hapmap]
rs870899	0.93[CHD][hapmap]
rs907712	0.83[EUR][1000 genomes]
rs9310120	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9310121	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9310122	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954964	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9809011	0.84[EUR][1000 genomes]
rs9811041	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9817553	0.88[ASW][hapmap];0.87[LWK][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9832305	0.86[CHD][hapmap]
rs9833400	1.00[ASW][hapmap];0.95[LWK][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9836340	0.87[CHD][hapmap]
rs9842599	0.87[CHD][hapmap]
rs9846844	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9852594	0.86[CHD][hapmap]
rs9853389	0.81[EUR][1000 genomes]
rs9854073	0.93[CHD][hapmap]
rs9866945	0.84[EUR][1000 genomes]
rs9866959	0.88[ASW][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9868782	0.93[CHD][hapmap];0.82[GIH][hapmap]
rs9877953	0.81[EUR][1000 genomes]
rs994129	0.82[EUR][1000 genomes]
rs9990016	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437866	chr3:89247881-89480265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590921	chr3:89294149-89392778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590922	chr3:89314862-89417064	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590923	chr3:89336417-89417171	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1001345	chr3:89368629-89444995	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1000694	chr3:89373820-89453045	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv590924	chr3:89375433-89417287	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89377800-89378400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:89378000-89378200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:89378000-89378200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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