Variant report

Variant	rs9880805
Chromosome Location	chr3:141760831-141760832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141752908..141754951-chr3:141758367..141761126,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11569198	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11569216	0.88[ASN][1000 genomes]
rs12495978	0.92[ASN][1000 genomes]
rs13069749	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1543064	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704990	0.80[AMR][1000 genomes]
rs1705619	0.80[AMR][1000 genomes]
rs1820941	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2063453	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2063454	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2271386	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2862122	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2862123	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2862124	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2862125	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2862126	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34092379	0.88[ASN][1000 genomes]
rs34464850	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34486172	0.88[ASN][1000 genomes]
rs34514405	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34579489	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs347684	0.82[ASN][1000 genomes]
rs347688	0.80[AMR][1000 genomes]
rs347689	0.84[ASN][1000 genomes]
rs347690	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35486283	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35787200	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3811708	0.92[ASN][1000 genomes]
rs3817176	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4315664	0.86[ASN][1000 genomes]
rs4315665	0.86[ASN][1000 genomes]
rs4683417	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56129773	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62283132	0.92[ASN][1000 genomes]
rs6764833	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778085	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795301	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803884	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6806443	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7619506	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630837	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7633321	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7638352	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs907293	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9289641	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs963396	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9863685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865777	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002446	chr3:141719169-142070290	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv877553	chr3:141732321-141786073	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv877554	chr3:141735532-141781890	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv877555	chr3:141740076-141791408	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv2757013	chr3:141756541-142094631	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv963365	chr3:141756577-141762756	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141747600-141762600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:141747600-141762800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:141747600-141773000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:141747600-141780400	Weak transcription	Left Ventricle	heart
5	chr3:141751200-141765000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:141751400-141764400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:141753600-141768400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:141755200-141771400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:141756200-141762600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:141757800-141762600	Weak transcription	Aorta	Aorta
11	chr3:141758400-141762600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:141758400-141777400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:141758800-141762200	Weak transcription	Thymus	Thymus
14	chr3:141758800-141762400	Weak transcription	Fetal Intestine Large	intestine
15	chr3:141758800-141762400	Weak transcription	Fetal Thymus	thymus
16	chr3:141758800-141762600	Weak transcription	Pancreas	Pancrea
17	chr3:141758800-141762600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:141758800-141768800	Weak transcription	Esophagus	oesophagus
19	chr3:141758800-141775800	Weak transcription	Ovary	ovary
20	chr3:141760000-141770000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:141760200-141762600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:141760400-141762400	Weak transcription	Fetal Intestine Small	intestine
23	chr3:141760400-141763600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:141760400-141773800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:141760600-141763800	Weak transcription	Right Ventricle	heart
26	chr3:141760600-141764000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:141760600-141800800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:141760800-141761000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
29	chr3:141760800-141761000	Enhancers	Dnd41	blood
30	chr3:141760800-141772600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:141760800-141774600	Weak transcription	Liver	Liver

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