Variant report

Variant	rs9881239
Chromosome Location	chr3:111805752-111805753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50134972..50135639-chr3:111805318..111805831,2	Hela-S3	cervix:
2	chr15:59225042..59225969-chr3:111804939..111805795,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction
ENSG00000139644	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13317473	1.00[YRI][hapmap]
rs4401339	1.00[YRI][hapmap]
rs9288941	1.00[YRI][hapmap]
rs9288945	1.00[YRI][hapmap]
rs9842060	1.00[YRI][hapmap]
rs9843450	1.00[YRI][hapmap]
rs9847890	1.00[YRI][hapmap]
rs9851895	1.00[YRI][hapmap]
rs9862315	1.00[YRI][hapmap]
rs9865986	1.00[YRI][hapmap]
rs9871532	1.00[YRI][hapmap]
rs9877734	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755927	chr3:111794310-111834310	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111804600-111805800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:111804600-111805800	Active TSS	Brain Anterior Caudate	brain
3	chr3:111804600-111805800	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr3:111804600-111806000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr3:111804600-111806000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:111804600-111806000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:111804600-111806000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:111804600-111806000	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr3:111804600-111806000	Active TSS	Brain Cingulate Gyrus	brain
10	chr3:111804600-111806000	Active TSS	Fetal Kidney	kidney
11	chr3:111804600-111806000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr3:111804600-111806400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:111804600-111806600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:111804600-111806800	Active TSS	Rectal Smooth Muscle	rectum
15	chr3:111804800-111805800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
16	chr3:111804800-111805800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
17	chr3:111804800-111805800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
18	chr3:111804800-111805800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:111804800-111805800	Flanking Active TSS	Liver	Liver
20	chr3:111804800-111805800	Active TSS	Brain Angular Gyrus	brain
21	chr3:111804800-111805800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:111804800-111805800	Active TSS	Colon Smooth Muscle	Colon
23	chr3:111804800-111805800	Active TSS	Esophagus	oesophagus
24	chr3:111804800-111805800	Active TSS	Left Ventricle	heart
25	chr3:111804800-111805800	Active TSS	Lung	lung
26	chr3:111804800-111805800	Active TSS	Ovary	ovary
27	chr3:111804800-111805800	Active TSS	Psoas Muscle	Psoas
28	chr3:111804800-111805800	Enhancers	Spleen	Spleen
29	chr3:111804800-111805800	Active TSS	HSMM	muscle
30	chr3:111804800-111805800	Active TSS	HSMMtube	muscle
31	chr3:111804800-111806000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:111804800-111806000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
34	chr3:111804800-111806000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
36	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
37	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Placenta	Placenta
38	chr3:111804800-111806000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
39	chr3:111804800-111806000	Active TSS	NHDF-Ad	bronchial
40	chr3:111804800-111806200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr3:111804800-111806200	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr3:111804800-111806200	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr3:111804800-111806200	Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr3:111804800-111806200	Active TSS	NHLF	lung
45	chr3:111804800-111806400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:111804800-111806600	Active TSS	H9 Cell Line	embryonic stem cell
47	chr3:111804800-111806600	Active TSS	Aorta	Aorta
48	chr3:111804800-111806600	Bivalent/Poised TSS	Fetal Stomach	stomach
49	chr3:111804800-111806600	Active TSS	Thymus	Thymus
50	chr3:111804800-111806800	Active TSS	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links