Variant report

Variant	rs13317473
Chromosome Location	chr3:111945230-111945231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10222396	0.89[AFR][1000 genomes]
rs13320785	1.00[AFR][1000 genomes]
rs28385403	0.89[AFR][1000 genomes]
rs28454836	0.89[AFR][1000 genomes]
rs4401339	1.00[YRI][hapmap]
rs9288941	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9288945	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9818745	0.94[AFR][1000 genomes]
rs9821699	0.89[AFR][1000 genomes]
rs9830851	1.00[AFR][1000 genomes]
rs9834013	1.00[AFR][1000 genomes]
rs9834079	1.00[AFR][1000 genomes]
rs9842060	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9843431	0.94[AFR][1000 genomes]
rs9843450	1.00[YRI][hapmap]
rs9847890	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9851895	1.00[YRI][hapmap]
rs9862315	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9865214	1.00[AFR][1000 genomes]
rs9865986	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9871532	1.00[YRI][hapmap]
rs9877734	1.00[YRI][hapmap]
rs9880130	0.89[AFR][1000 genomes]
rs9881180	0.89[AFR][1000 genomes]
rs9881239	1.00[YRI][hapmap]
rs9985308	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591291	chr3:111914624-111962851	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3437811	chr3:111929311-111950399	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111942400-111952400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111945200-111945600	ZNF genes & repeats	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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