Variant report

Variant	rs10222396
Chromosome Location	chr3:111868169-111868170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13317473	0.89[AFR][1000 genomes]
rs13320785	0.89[AFR][1000 genomes]
rs28385403	1.00[AFR][1000 genomes]
rs28454836	1.00[AFR][1000 genomes]
rs9288941	0.89[AFR][1000 genomes]
rs9288945	0.89[AFR][1000 genomes]
rs9818745	0.83[AFR][1000 genomes]
rs9821699	1.00[AFR][1000 genomes]
rs9830851	0.89[AFR][1000 genomes]
rs9834013	0.89[AFR][1000 genomes]
rs9834079	0.89[AFR][1000 genomes]
rs9842060	0.89[AFR][1000 genomes]
rs9843431	0.83[AFR][1000 genomes]
rs9847890	0.89[AFR][1000 genomes]
rs9862315	0.89[AFR][1000 genomes]
rs9865214	0.89[AFR][1000 genomes]
rs9865986	0.89[AFR][1000 genomes]
rs9880130	1.00[AFR][1000 genomes]
rs9881180	1.00[AFR][1000 genomes]
rs9985308	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111866200-111875800	Weak transcription	Right Ventricle	heart
2	chr3:111867200-111869200	ZNF genes & repeats	HMEC	breast
3	chr3:111867400-111868800	ZNF genes & repeats	Gastric	stomach
4	chr3:111867400-111868800	ZNF genes & repeats	Thymus	Thymus
5	chr3:111867400-111869000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:111867400-111869000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:111867400-111869200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:111867600-111868800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:111867600-111868800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:111867600-111868800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
11	chr3:111867600-111869400	ZNF genes & repeats	Left Ventricle	heart
12	chr3:111867800-111868800	ZNF genes & repeats	Fetal Stomach	stomach
13	chr3:111867800-111869000	ZNF genes & repeats	Esophagus	oesophagus
14	chr3:111867800-111869400	Enhancers	NHEK	skin
15	chr3:111868000-111868600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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