Variant report

Variant	rs9843431
Chromosome Location	chr3:111998937-111998938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10222396	0.83[AFR][1000 genomes]
rs13317473	0.94[AFR][1000 genomes]
rs13319370	1.00[YRI][hapmap]
rs13320785	0.94[AFR][1000 genomes]
rs28385403	0.83[AFR][1000 genomes]
rs28454836	0.83[AFR][1000 genomes]
rs9288941	0.94[AFR][1000 genomes]
rs9288945	0.94[AFR][1000 genomes]
rs9818745	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9821699	0.83[AFR][1000 genomes]
rs9830851	0.94[AFR][1000 genomes]
rs9834013	0.94[AFR][1000 genomes]
rs9834079	0.94[AFR][1000 genomes]
rs9842060	0.94[AFR][1000 genomes]
rs9847890	0.94[AFR][1000 genomes]
rs9849358	1.00[YRI][hapmap]
rs9862315	0.94[AFR][1000 genomes]
rs9865214	0.94[AFR][1000 genomes]
rs9865986	0.94[AFR][1000 genomes]
rs9880130	0.83[AFR][1000 genomes]
rs9881180	0.83[AFR][1000 genomes]
rs9985308	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111972200-111999000	Weak transcription	Left Ventricle	heart
2	chr3:111998600-111999400	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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