Variant report
| Variant | rs9849358 |
|---|---|
| Chromosome Location | chr3:112000258-112000259 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:3 , 50 per page) page:
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10222396 | 0.83[AFR][1000 genomes] |
| rs13317473 | 0.94[AFR][1000 genomes] |
| rs13319370 | 1.00[YRI][hapmap] |
| rs13320785 | 0.94[AFR][1000 genomes] |
| rs28385403 | 0.83[AFR][1000 genomes] |
| rs28454836 | 0.83[AFR][1000 genomes] |
| rs9288941 | 0.94[AFR][1000 genomes] |
| rs9288945 | 0.94[AFR][1000 genomes] |
| rs9818745 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs9821699 | 0.83[AFR][1000 genomes] |
| rs9830851 | 0.94[AFR][1000 genomes] |
| rs9834013 | 0.94[AFR][1000 genomes] |
| rs9834079 | 0.94[AFR][1000 genomes] |
| rs9842060 | 0.94[AFR][1000 genomes] |
| rs9843431 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs9847890 | 0.94[AFR][1000 genomes] |
| rs9862315 | 0.94[AFR][1000 genomes] |
| rs9865214 | 0.94[AFR][1000 genomes] |
| rs9865986 | 0.94[AFR][1000 genomes] |
| rs9880130 | 0.83[AFR][1000 genomes] |
| rs9881180 | 0.83[AFR][1000 genomes] |
| rs9985308 | 0.94[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv10307 | chr3:111903974-112087686 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv877340 | chr3:111936961-112013546 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv3949 | chr3:111998512-112044060 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
