Variant report

Variant	rs9883365
Chromosome Location	chr3:54309124-54309125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11714935	0.87[AFR][1000 genomes]
rs12374075	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12374128	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13077338	0.89[AFR][1000 genomes]
rs4257582	0.87[AFR][1000 genomes]
rs4928027	0.89[AFR][1000 genomes]
rs55751124	0.82[EUR][1000 genomes]
rs55768606	0.83[EUR][1000 genomes]
rs55826666	0.84[EUR][1000 genomes]
rs55982339	0.84[EUR][1000 genomes]
rs56034762	0.83[EUR][1000 genomes]
rs56212431	0.84[EUR][1000 genomes]
rs56245961	0.85[AFR][1000 genomes]
rs56411589	0.84[EUR][1000 genomes]
rs57211759	0.84[EUR][1000 genomes]
rs57836319	0.83[EUR][1000 genomes]
rs59804205	0.83[EUR][1000 genomes]
rs61200778	0.83[EUR][1000 genomes]
rs6445640	0.84[EUR][1000 genomes]
rs6766834	0.84[AFR][1000 genomes]
rs6773234	0.89[AFR][1000 genomes]
rs67977262	0.89[AFR][1000 genomes]
rs7427601	0.83[EUR][1000 genomes]
rs7432978	0.83[EUR][1000 genomes]
rs7616934	0.87[AFR][1000 genomes]
rs9825336	0.80[AFR][1000 genomes]
rs9840013	0.89[AFR][1000 genomes]
rs9840196	0.89[AFR][1000 genomes]
rs9852538	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876806	chr3:54256648-54330010	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54301000-54310400	Weak transcription	Aorta	Aorta
2	chr3:54307800-54309200	Enhancers	Hela-S3	cervix
3	chr3:54308400-54309200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:54308400-54309200	Enhancers	Left Ventricle	heart
5	chr3:54308600-54309200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:54308600-54309200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:54308600-54309200	Enhancers	Right Atrium	heart
8	chr3:54308600-54309400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:54308800-54309400	Enhancers	Psoas Muscle	Psoas
10	chr3:54309000-54309200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:54309000-54309400	Enhancers	Skeletal Muscle Male	skeletal muscle

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