Variant report

Variant	rs9884237
Chromosome Location	chr4:99953851-99953852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99940234..99942578-chr4:99952966..99955722,2	K562	blood:
2	chr4:99953749..99955598-chr4:99957117..99959892,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10016708	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10018631	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10034645	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10084896	1.00[YRI][hapmap]
rs28419466	0.96[AFR][1000 genomes]
rs28550936	0.93[AFR][1000 genomes]
rs28575896	0.87[AFR][1000 genomes]
rs28591457	0.96[AFR][1000 genomes]
rs28594750	1.00[AFR][1000 genomes]
rs28676415	0.93[AFR][1000 genomes]
rs28792701	0.89[AFR][1000 genomes]
rs28800592	0.81[AFR][1000 genomes]
rs28894706	1.00[AFR][1000 genomes]
rs6832697	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6846251	0.93[AFR][1000 genomes]
rs7356160	0.91[YRI][hapmap]
rs7356519	0.90[YRI][hapmap]
rs7356525	0.91[YRI][hapmap]
rs9307232	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9996051	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1002927	chr4:99952472-100148690	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99931600-99971400	Weak transcription	Aorta	Aorta
2	chr4:99932600-99969800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:99937600-99966200	Weak transcription	HUVEC	blood vessel
4	chr4:99942200-99969600	Weak transcription	Fetal Brain Female	brain
5	chr4:99942800-99955800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:99942800-99957000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:99943000-99959200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:99943800-99966200	Weak transcription	Adipose Nuclei	Adipose
9	chr4:99944200-99966200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:99944200-99968800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:99944200-99969600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:99944200-99979000	Weak transcription	Colonic Mucosa	Colon
13	chr4:99944200-99979200	Weak transcription	Right Ventricle	heart
14	chr4:99944400-99955200	Weak transcription	NH-A	brain
15	chr4:99944400-99955400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:99944400-99958400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:99944400-99958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:99944400-99958800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:99944400-99958800	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:99944400-99959400	Weak transcription	HSMM	muscle
21	chr4:99944400-99965000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:99944400-99966400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:99944400-99967200	Weak transcription	Fetal Stomach	stomach
24	chr4:99944400-99971600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:99944400-99979200	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:99945000-99969600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:99945600-99957000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:99946000-99976800	Weak transcription	Stomach Mucosa	stomach
29	chr4:99946200-99970000	Weak transcription	Brain Anterior Caudate	brain
30	chr4:99946200-99977000	Weak transcription	Colon Smooth Muscle	Colon
31	chr4:99946400-99969000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:99946400-99969400	Weak transcription	Placenta	Placenta
33	chr4:99946400-99973600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr4:99946400-99979000	Weak transcription	Esophagus	oesophagus
35	chr4:99946600-99964800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr4:99946600-99970000	Weak transcription	Hela-S3	cervix
37	chr4:99947000-99955200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:99947000-99955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:99947000-99957200	Weak transcription	Fetal Lung	lung
40	chr4:99947000-99964800	Weak transcription	Left Ventricle	heart
41	chr4:99947000-99969600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:99947000-99969800	Weak transcription	Ovary	ovary
43	chr4:99947000-99979000	Weak transcription	Gastric	stomach
44	chr4:99947000-99979200	Weak transcription	Pancreas	Pancrea
45	chr4:99947200-99955200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:99947400-99982600	Weak transcription	Psoas Muscle	Psoas
47	chr4:99948400-99955200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:99949000-99964400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr4:99949000-99979000	Weak transcription	Small Intestine	intestine
50	chr4:99949200-99968400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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