Variant report

Variant	rs9996051
Chromosome Location	chr4:99898145-99898146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10001003	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10016708	0.91[YRI][hapmap]
rs10018631	0.90[YRI][hapmap]
rs10032634	1.00[AMR][1000 genomes]
rs10034645	0.91[YRI][hapmap]
rs10084896	0.87[YRI][hapmap]
rs28377998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28607521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28792701	0.82[AFR][1000 genomes]
rs28987087	1.00[AMR][1000 genomes]
rs6832697	0.91[YRI][hapmap]
rs6852510	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356160	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356519	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356525	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7665813	1.00[AMR][1000 genomes]
rs9307232	0.91[YRI][hapmap]
rs9884237	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99897600-99898400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:99897600-99898600	Enhancers	Aorta	Aorta
3	chr4:99897800-99898200	Enhancers	HUVEC	blood vessel
4	chr4:99897800-99898400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:99897800-99898400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:99897800-99898400	Enhancers	HMEC	breast
7	chr4:99897800-99898600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:99897800-99898600	Enhancers	Placenta	Placenta
9	chr4:99897800-99898600	Enhancers	Osteobl	bone
10	chr4:99898000-99898400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:99898000-99898600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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