Variant report

Variant	rs9885754
Chromosome Location	chr6:150472107-150472108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150469308..150480268-chr6:150484066..150492629,15	K562	blood:
2	chr6:150471157..150474765-chr6:150475895..150479622,5	K562	blood:

Variant related genes	Relation type
ENSG00000238594	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9885654	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150467800-150472600	Enhancers	NHEK	skin
2	chr6:150467800-150473400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150467800-150473400	Weak transcription	Right Atrium	heart
4	chr6:150468200-150472800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:150469400-150472200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:150470000-150476800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:150470200-150472800	Enhancers	HMEC	breast
8	chr6:150470800-150472600	Weak transcription	Fetal Brain Male	brain
9	chr6:150471000-150472200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr6:150471000-150472400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr6:150471000-150472600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150471200-150472400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr6:150471200-150472400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr6:150471200-150472800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:150471400-150472200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr6:150471400-150472200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
17	chr6:150471400-150472400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr6:150471400-150472600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr6:150471400-150472600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:150471400-150472600	Bivalent Enhancer	Left Ventricle	heart
21	chr6:150471400-150472600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
22	chr6:150471400-150472800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:150471400-150472800	Enhancers	Fetal Thymus	thymus
24	chr6:150471400-150473000	Flanking Active TSS	K562	blood
25	chr6:150471600-150472400	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:150471600-150472400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:150471600-150472600	Enhancers	Psoas Muscle	Psoas
28	chr6:150471600-150474200	Enhancers	Right Ventricle	heart
29	chr6:150471800-150472200	Enhancers	Fetal Heart	heart
30	chr6:150471800-150472200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:150471800-150472400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:150471800-150472600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:150471800-150472600	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr6:150471800-150472800	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr6:150471800-150473000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:150472000-150472200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:150472000-150472200	Enhancers	Esophagus	oesophagus
38	chr6:150472000-150472200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr6:150472000-150476200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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