Variant report

Variant	rs9885654
Chromosome Location	chr6:150472250-150472251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150469308..150480268-chr6:150484066..150492629,15	K562	blood:
2	chr6:150471157..150474765-chr6:150475895..150479622,5	K562	blood:

Variant related genes	Relation type
ENSG00000238594	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11752228	1.00[JPT][hapmap]
rs17512661	1.00[JPT][hapmap]
rs55710678	0.81[ASN][1000 genomes]
rs56058461	0.81[ASN][1000 genomes]
rs9885754	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150467800-150472600	Enhancers	NHEK	skin
2	chr6:150467800-150473400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150467800-150473400	Weak transcription	Right Atrium	heart
4	chr6:150468200-150472800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:150470000-150476800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:150470200-150472800	Enhancers	HMEC	breast
7	chr6:150470800-150472600	Weak transcription	Fetal Brain Male	brain
8	chr6:150471000-150472400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr6:150471000-150472600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150471200-150472400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr6:150471200-150472400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr6:150471200-150472800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:150471400-150472400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr6:150471400-150472600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr6:150471400-150472600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:150471400-150472600	Bivalent Enhancer	Left Ventricle	heart
17	chr6:150471400-150472600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
18	chr6:150471400-150472800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:150471400-150472800	Enhancers	Fetal Thymus	thymus
20	chr6:150471400-150473000	Flanking Active TSS	K562	blood
21	chr6:150471600-150472400	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:150471600-150472400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:150471600-150472600	Enhancers	Psoas Muscle	Psoas
24	chr6:150471600-150474200	Enhancers	Right Ventricle	heart
25	chr6:150471800-150472400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:150471800-150472600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:150471800-150472600	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr6:150471800-150472800	Bivalent Enhancer	Stomach Mucosa	stomach
29	chr6:150471800-150473000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr6:150472000-150476200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:150472200-150472400	Flanking Active TSS	Fetal Heart	heart
32	chr6:150472200-150472400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr6:150472200-150472600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr6:150472200-150472600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
35	chr6:150472200-150472800	Bivalent Enhancer	Fetal Intestine Large	intestine
36	chr6:150472200-150472800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
37	chr6:150472200-150473000	Bivalent Enhancer	Fetal Intestine Small	intestine
38	chr6:150472200-150473000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
39	chr6:150472200-150473600	Weak transcription	Esophagus	oesophagus
40	chr6:150472200-150473800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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