Variant report

Variant	rs17512661
Chromosome Location	chr6:150466877-150466878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150465090..150467055-chr6:150662955..150664731,2	K562	blood:
2	chr6:150460907..150462974-chr6:150465892..150468393,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11752228	1.00[JPT][hapmap]
rs11752342	0.82[ASN][1000 genomes]
rs11752652	0.82[ASN][1000 genomes]
rs11756964	0.82[ASN][1000 genomes]
rs2012793	0.82[ASN][1000 genomes]
rs34373648	0.82[ASN][1000 genomes]
rs35564859	0.82[ASN][1000 genomes]
rs55905536	0.82[ASN][1000 genomes]
rs55917240	0.82[ASN][1000 genomes]
rs55972005	0.82[ASN][1000 genomes]
rs912568	0.82[ASN][1000 genomes]
rs9885654	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150463600-150467200	Active TSS	Right Atrium	heart
2	chr6:150465000-150467000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr6:150465000-150467200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:150465000-150467400	Flanking Active TSS	K562	blood
5	chr6:150465400-150467000	Bivalent/Poised TSS	Fetal Heart	heart
6	chr6:150465600-150467600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:150465600-150471600	Weak transcription	Psoas Muscle	Psoas
8	chr6:150465600-150471800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150465800-150467000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:150465800-150467400	Weak transcription	Placenta	Placenta
11	chr6:150465800-150468800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:150466000-150467800	Weak transcription	Right Ventricle	heart
13	chr6:150466200-150467000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
14	chr6:150466200-150467600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:150466400-150467000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:150466400-150467000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
17	chr6:150466400-150467200	Flanking Active TSS	HMEC	breast
18	chr6:150466400-150467200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr6:150466400-150467400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:150466400-150467400	Flanking Active TSS	NHEK	skin
21	chr6:150466600-150467000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:150466600-150467200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:150466600-150467400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:150466600-150467600	Bivalent Enhancer	GM12878-XiMat	blood
25	chr6:150466600-150467800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:150466800-150467000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:150466800-150467000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
28	chr6:150466800-150467000	Bivalent Enhancer	Fetal Lung	lung
29	chr6:150466800-150467000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:150466800-150467200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
31	chr6:150466800-150467600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr6:150466800-150467800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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