Variant report

Variant	rs11752228
Chromosome Location	chr6:150507523-150507524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150505143..150508527-chr6:150511374..150514793,3	MCF-7	breast:

rs_ID	r²[population]
rs17512661	1.00[JPT][hapmap]
rs9885654	1.00[JPT][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs11752228	RAET1G	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150497800-150511000	Weak transcription	NHEK	skin
2	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150500000-150508000	Enhancers	Fetal Heart	heart
4	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
5	chr6:150503600-150507600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:150503600-150507800	Enhancers	Primary B cells from cord blood	blood
7	chr6:150504200-150510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:150504600-150507800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:150504800-150508000	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:150505400-150508400	Enhancers	K562	blood
11	chr6:150505600-150507600	Enhancers	Fetal Intestine Small	intestine
12	chr6:150505600-150510400	Weak transcription	Right Ventricle	heart
13	chr6:150506200-150507800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr6:150506600-150507600	Enhancers	Stomach Mucosa	stomach
15	chr6:150506600-150512000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:150506800-150507600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:150506800-150512000	Weak transcription	HMEC	breast
19	chr6:150507000-150507800	Weak transcription	Lung	lung
20	chr6:150507000-150513200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:150507200-150510800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:150507200-150511200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:150507400-150507600	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr6:150507400-150507800	Weak transcription	Left Ventricle	heart
25	chr6:150507400-150508000	Enhancers	Colonic Mucosa	Colon
26	chr6:150507400-150510400	Weak transcription	Fetal Intestine Large	intestine

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