Variant report

Variant	rs56058461
Chromosome Location	chr6:150482321-150482322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55710678	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919682	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9371787	0.82[EUR][1000 genomes]
rs9885654	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150474200-150485800	Weak transcription	Left Ventricle	heart
2	chr6:150474200-150493600	Weak transcription	Right Ventricle	heart
3	chr6:150476000-150490600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:150477600-150482600	Weak transcription	Fetal Heart	heart
5	chr6:150479000-150484000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:150479200-150485800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150479200-150486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:150479200-150486000	Weak transcription	HMEC	breast
9	chr6:150479200-150486000	Weak transcription	NHEK	skin
10	chr6:150479200-150486200	Weak transcription	K562	blood
11	chr6:150479200-150495800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:150481400-150482600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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