Variant report

Variant	rs6919682
Chromosome Location	chr6:150491658-150491659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55710678	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56058461	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150474200-150493600	Weak transcription	Right Ventricle	heart
2	chr6:150479200-150495800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:150486200-150497400	Weak transcription	Right Atrium	heart
4	chr6:150486400-150492200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:150488200-150492200	Weak transcription	Left Ventricle	heart
6	chr6:150488200-150497800	Weak transcription	Colonic Mucosa	Colon
7	chr6:150488800-150492000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:150488800-150492000	Weak transcription	Psoas Muscle	Psoas
9	chr6:150489000-150492600	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:150490600-150494200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150491400-150492200	Weak transcription	Fetal Heart	heart
12	chr6:150491400-150497200	Weak transcription	NHEK	skin
13	chr6:150491400-150497600	Weak transcription	K562	blood
14	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:150491600-150496600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:150491600-150496800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:150491600-150501400	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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