Variant report

Variant	rs55710678
Chromosome Location	chr6:150490470-150490471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150487685..150490900-chrX:41144153..41147153,5	K562	blood:
2	chr6:150489133..150490702-chr6:150526456..150528096,2	K562	blood:
3	chr6:150489096..150490648-chr6:150593097..150595301,2	K562	blood:
4	chr14:68655077..68656597-chr6:150487690..150490646,2	K562	blood:
5	chr6:150426417..150429410-chr6:150487738..150490654,2	K562	blood:
6	chr6:150489261..150490775-chr6:150576809..150578342,2	K562	blood:
7	chr6:150489381..150492154-chr6:150493380..150496594,3	K562	blood:
8	chr6:150487734..150491272-chr6:150592346..150595301,4	K562	blood:
9	chr14:68653597..68656597-chr6:150487153..150490564,3	K562	blood:

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56058461	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919682	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9885654	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150474200-150493600	Weak transcription	Right Ventricle	heart
2	chr6:150476000-150490600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:150479200-150495800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:150486200-150497400	Weak transcription	Right Atrium	heart
5	chr6:150486400-150492200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:150486800-150490600	Weak transcription	HMEC	breast
7	chr6:150487200-150490600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150487200-150490600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:150487200-150490600	Weak transcription	NHEK	skin
10	chr6:150488000-150490600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150488200-150492200	Weak transcription	Left Ventricle	heart
12	chr6:150488200-150497800	Weak transcription	Colonic Mucosa	Colon
13	chr6:150488800-150491200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:150488800-150492000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:150488800-150492000	Weak transcription	Psoas Muscle	Psoas
16	chr6:150489000-150490600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:150489000-150490800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:150489000-150492600	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:150490000-150490600	Enhancers	K562	blood
20	chr6:150490400-150491000	Enhancers	Fetal Heart	heart
21	chr6:150490400-150491400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:150490400-150491400	Enhancers	Osteobl	bone
23	chr6:150490400-150491600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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