Variant report

Variant	rs9888912
Chromosome Location	chr16:52102476-52102477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10521048	0.88[YRI][hapmap]
rs13331253	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332583	0.88[YRI][hapmap]
rs13339283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1592489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16950756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17185747	1.00[TSI][hapmap]
rs28493173	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57792188	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921556	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9930734	0.95[AFR][1000 genomes]
rs9936886	1.00[TSI][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv827650	chr16:52067728-52124369	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52101200-52102600	Enhancers	Brain Anterior Caudate	brain
2	chr16:52101200-52102600	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr16:52101400-52110400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr16:52101600-52104200	Enhancers	Brain Hippocampus Middle	brain
5	chr16:52101600-52107600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr16:52102000-52103600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr16:52102200-52103000	Enhancers	Liver	Liver
8	chr16:52102200-52103600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr16:52102400-52102600	Flanking Active TSS	Brain Substantia Nigra	brain
10	chr16:52102400-52102800	Flanking Active TSS	Brain Angular Gyrus	brain
11	chr16:52102400-52102800	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr16:52102400-52102800	Enhancers	Small Intestine	intestine
13	chr16:52102400-52103000	Flanking Active TSS	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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