Variant report

Variant	rs9889100
Chromosome Location	chr16:71986073-71986074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71977547..71980490-chr16:71985780..71987589,2	K562	blood:
2	chr16:71942932..71945142-chr16:71984421..71987167,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1035543	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10852508	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11647844	0.88[ASN][1000 genomes]
rs11647947	0.88[ASN][1000 genomes]
rs12445043	0.88[ASN][1000 genomes]
rs12445713	0.88[ASN][1000 genomes]
rs12447423	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12448111	0.86[ASN][1000 genomes]
rs12600153	0.83[EUR][1000 genomes]
rs12600163	0.83[EUR][1000 genomes]
rs12708920	0.88[ASN][1000 genomes]
rs12925901	0.88[ASN][1000 genomes]
rs12926353	0.88[ASN][1000 genomes]
rs12927381	0.88[ASN][1000 genomes]
rs13332113	0.82[EUR][1000 genomes]
rs13332180	0.83[EUR][1000 genomes]
rs13337118	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1834033	0.87[EUR][1000 genomes]
rs2291947	0.84[EUR][1000 genomes]
rs2303220	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2878406	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34111614	0.89[EUR][1000 genomes]
rs4462592	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4538017	0.84[EUR][1000 genomes]
rs4788448	0.82[EUR][1000 genomes]
rs4788567	0.84[EUR][1000 genomes]
rs4788572	0.82[EUR][1000 genomes]
rs4788574	0.82[EUR][1000 genomes]
rs4788578	0.87[EUR][1000 genomes]
rs58114621	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58609735	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs60075093	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60740701	0.83[EUR][1000 genomes]
rs7186518	0.86[ASN][1000 genomes]
rs7186712	0.88[ASN][1000 genomes]
rs7350856	0.89[EUR][1000 genomes]
rs8046159	0.88[ASN][1000 genomes]
rs8046703	0.91[ASN][1000 genomes]
rs8051124	0.88[ASN][1000 genomes]
rs8051364	0.88[ASN][1000 genomes]
rs8052028	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs952159	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs952160	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9921705	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9925441	0.85[EUR][1000 genomes]
rs9925684	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9936965	0.83[EUR][1000 genomes]
rs9937626	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1056439	chr16:71916498-72051144	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1055854	chr16:71922144-72082886	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv906893	chr16:71922663-71988728	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
5	nsv516948	chr16:71965725-71988728	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
6	nsv833273	chr16:71971805-72152854	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	esv2758430	chr16:71976344-72274347	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	esv2758654	chr16:71976344-72274347	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
9	nsv428329	chr16:71976344-72274347	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71968800-71995400	Weak transcription	Right Atrium	heart
2	chr16:71969600-71990600	Weak transcription	Adipose Nuclei	Adipose
3	chr16:71969600-71999200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links