Variant report

Variant	rs9890407
Chromosome Location	chr17:37604750-37604751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37604386..37611889-chr17:37616048..37620931,25	K562	blood:
2	chr17:37604313..37610125-chr17:37615155..37621784,15	MCF-7	breast:
3	chr17:37604291..37611614-chr17:37614953..37621274,26	K562	blood:

Variant related genes	Relation type
ENSG00000167258	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13340960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73983275	1.00[AMR][1000 genomes]
rs9894027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9896394	1.00[AMR][1000 genomes]
rs9898750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9912338	1.00[EUR][1000 genomes]
rs9916503	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
11	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37559000-37606600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr17:37560800-37605000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:37560800-37605400	Strong transcription	Fetal Thymus	thymus
4	chr17:37560800-37605600	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:37561000-37604800	Strong transcription	Fetal Muscle Trunk	muscle
6	chr17:37561000-37604800	Strong transcription	Placenta	Placenta
7	chr17:37561000-37605200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:37561000-37605400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:37561200-37605000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr17:37561200-37605200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:37561400-37604800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr17:37561400-37604800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr17:37561400-37605000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr17:37561600-37605600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:37563000-37604800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr17:37563800-37605600	Strong transcription	Fetal Stomach	stomach
17	chr17:37563800-37606000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:37564000-37605200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr17:37564000-37605400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr17:37566800-37606400	Weak transcription	Stomach Mucosa	stomach
21	chr17:37569000-37605200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr17:37571600-37606600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr17:37577800-37604800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr17:37579200-37605000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr17:37579400-37605600	Strong transcription	Fetal Intestine Large	intestine
26	chr17:37584200-37606600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr17:37588200-37606400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr17:37589800-37604800	Strong transcription	Osteobl	bone
29	chr17:37589800-37605400	Strong transcription	Fetal Brain Female	brain
30	chr17:37590800-37606600	Weak transcription	Fetal Heart	heart
31	chr17:37591200-37605000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr17:37593800-37606600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr17:37594800-37606200	Weak transcription	Small Intestine	intestine
34	chr17:37595000-37605400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr17:37596400-37605000	Strong transcription	Primary T cells from cord blood	blood
36	chr17:37597200-37606200	Strong transcription	Fetal Intestine Small	intestine
37	chr17:37597600-37606400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr17:37597600-37606400	Weak transcription	Fetal Kidney	kidney
39	chr17:37597800-37605000	Strong transcription	Lung	lung
40	chr17:37598000-37606400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr17:37598000-37606400	Weak transcription	HMEC	breast
42	chr17:37598200-37606400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr17:37598400-37606400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr17:37598400-37606600	Weak transcription	Psoas Muscle	Psoas
45	chr17:37598600-37606400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr17:37598800-37606600	Weak transcription	Aorta	Aorta
47	chr17:37599000-37604800	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr17:37599200-37605600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr17:37599400-37605000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr17:37599400-37606800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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