Variant report

Variant	rs9891344
Chromosome Location	chr17:34068576-34068577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34068292..34072189-chr17:34089622..34092820,3	K562	blood:
2	chr17:34068162..34070385-chr17:34073264..34076166,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28421706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698913	1.00[AMR][1000 genomes]
rs57469324	1.00[AMR][1000 genomes]
rs9893011	1.00[AMR][1000 genomes]
rs9898142	1.00[AMR][1000 genomes]
rs9904890	1.00[AMR][1000 genomes]
rs9910817	1.00[AMR][1000 genomes]
rs9911015	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34067200-34069000	Enhancers	Spleen	Spleen
2	chr17:34067400-34068800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr17:34068000-34068600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr17:34068000-34068600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr17:34068000-34068600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:34068000-34068600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
7	chr17:34068000-34068600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
8	chr17:34068000-34068600	Bivalent Enhancer	Small Intestine	intestine
9	chr17:34068000-34068600	Flanking Bivalent TSS/Enh	HMEC	breast
10	chr17:34068000-34068800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:34068000-34068800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
12	chr17:34068000-34068800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:34068000-34068800	Bivalent Enhancer	Colonic Mucosa	Colon
14	chr17:34068000-34068800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr17:34068000-34068800	Bivalent Enhancer	Fetal Brain Male	brain
16	chr17:34068000-34068800	Bivalent Enhancer	Fetal Intestine Large	intestine
17	chr17:34068000-34068800	Bivalent Enhancer	Fetal Stomach	stomach
18	chr17:34068000-34068800	Enhancers	Gastric	stomach
19	chr17:34068000-34068800	Enhancers	Pancreas	Pancrea
20	chr17:34068000-34068800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
21	chr17:34068000-34069000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr17:34068000-34069000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
23	chr17:34068000-34069000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:34068000-34069000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
25	chr17:34068000-34069000	Enhancers	Fetal Heart	heart
26	chr17:34068000-34069000	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr17:34068000-34069000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
28	chr17:34068000-34069000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
29	chr17:34068000-34069400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
30	chr17:34068200-34068600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:34068200-34068600	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
32	chr17:34068200-34068600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
33	chr17:34068200-34068600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr17:34068200-34068600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr17:34068200-34068600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr17:34068200-34068600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
37	chr17:34068200-34068600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
38	chr17:34068200-34068600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr17:34068200-34068600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
40	chr17:34068200-34068600	Active TSS	Psoas Muscle	Psoas
41	chr17:34068200-34068600	Bivalent/Poised TSS	Thymus	Thymus
42	chr17:34068200-34068800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr17:34068200-34068800	Active TSS	H9 Cell Line	embryonic stem cell
44	chr17:34068200-34068800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr17:34068200-34068800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
46	chr17:34068200-34068800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr17:34068200-34068800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr17:34068200-34068800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr17:34068200-34068800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr17:34068200-34068800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links